The second was more about attacking instincts than technical ability, the forward tapping home the rebound after Young Boys goalkeeper David Von Ballmoos failed to steer Blaise Matuidi's powerful drive from the edge of the penalty area away from danger.
And goalkeeper Keylor Navas made a brutally honest admission after the result in Russian Federation, stating that the club clearly do miss Cristiano Ronaldo.
In the 69th minute an incredible display of passing from Juventus ended with Juan Cuadrado playing a cross for Dybala.
"Cristiano (Ronaldo) made a decision to leave Real Madrid", he said after the game, as quoted by Marca.
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The win leaves them with six points in Group H while group stage debutants Young Boys have yet to pick up a point or score a goal after losing both games 3-0 - a stark contrast to their Swiss league record of nine straight wins.
They could not get past the goalkeeper, Igor Akinfeev, who was sent off in injury time for two bookings in the space of 10 seconds for yelling at the referee as CSKA held on for a famous victory.
Portuguese star Cristiano Ronaldo was suspended after his contested red card during the Italian side's 2-0 win over Valencia in the first round of games.
- Dybala has become the fourth player to score a hat-trick for the club in the Champions League, following Filippo Inzaghi (x2), Alessandro Del Piero and Arturo Vidal.
"Obviously, I want to play....(but) being left out has made me work harder and concentrate more".